Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs4619808 | chr3:48367835 | C/T | 2.88E-5 | 502 | 37.47 | 38.83 | 22.42 | KM Plot |
KIRC | rs4630276 | chr11:1531694 | T/C | 8.08E-5 | 509 | 5.47 | 37.37 | 37.47 | KM Plot |
KIRC | rs4632568 | chr3:48367819 | C/T | 2.88E-5 | 502 | 37.47 | 38.83 | 22.42 | KM Plot |
KIRC | rs463535 | chr11:2781670 | T/C | 0.000134 | 501 | 33.4 | 34.13 | 38 | KM Plot |
KIRC | rs466220 | chr16:23602499 | T/A | 8.29E-9 | 507 | 37.6 | 34.87 | 1.62 | KM Plot |
KIRC | rs4723932 | chr7:40167416 | T/C | 5.96E-9 | 501 | 2.57 | 36.63 | 37.6 | KM Plot |
KIRC | rs4790719 | chr17:4881434 | A/G | 2.68E-7 | 509 | 3.37 | 34.47 | 37.53 | KM Plot |
KIRC | rs4790722 | chr17:4895763 | G/A | 3.51E-7 | 500 | 37.47 | 32.57 | 3.37 | KM Plot |
KIRC | rs4802172 | chr19:43818210 | T/C | 6.81E-12 | 500 | 37.67 | 36.93 | 2.17 | KM Plot |
KIRC | rs4803598 | chr19:43811811 | C/T | 3.64E-12 | 509 | 37.67 | 35.62 | 2.17 | KM Plot |
KIRC | rs4803599 | chr19:43811878 | G/T | 4.33E-12 | 507 | 37.53 | 36.4 | 2.17 | KM Plot |
KIRC | rs4803600 | chr19:43813328 | C/T | 4.52E-12 | 506 | 37.6 | 36.4 | 2.17 | KM Plot |
KIRC | rs4819254 | chr21:47887462 | T/A | 2.93E-5 | 504 | 37.47 | 43.25 | 6.87 | KM Plot |
KIRC | rs4819263 | chr21:47950866 | G/A | 2.46E-5 | 501 | 37.47 | 37.53 | 6.87 | KM Plot |
KIRC | rs4823844 | chr22:46921772 | A/G | 0.00013 | 493 | 7.1 | 36.87 | 37.6 | KM Plot |